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Report for Sequence Feature Glyma02g00830

Feature Type:gene_model
Chromosome:Gm02
Start:625967
stop:630819
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g00830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04400AT Annotation by Michelle Graham. TAIR10: cryptochrome 2 | chr1:1185719-1187901 REVERSE LENGTH=612 SoyBaseE_val: 0ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006325GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin organization SoyBaseN/AISS
GO:0006338GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin remodeling SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009638GO-bp Annotation by Michelle Graham. GO Biological Process: phototropism SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009911GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0010617GO-bp Annotation by Michelle Graham. GO Biological Process: circadian regulation of calcium ion oscillation SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0009882GO-mf Annotation by Michelle Graham. GO Molecular Function: blue light photoreceptor activity SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
KOG0133 KOG Deoxyribodipyrimidine photolyase/cryptochrome JGI ISS
PTHR11455Panther DNA PHOTOLYASE JGI ISS
PF00875PFAM DNA photolyase JGI ISS
PF03441PFAM FAD binding domain of DNA photolyase JGI ISS
UniRef100_D0FZ20UniRef Annotation by Michelle Graham. Best UniRef hit: Cryptochrome2 n=1 Tax=Glycine max RepID=D0FZ20_SOYBN SoyBaseE_val: 0ISS
UniRef100_D0FZ20UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cryptochrome2 n=1 Tax=Glycine max RepID=D0FZ20_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma02g00830
LocusGene SymbolProtein Name
CRY2B Cryptochrome 2-like

Expression Patterns of Glyma02g00830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g005700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g00830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g00830
>Glyma02g00830.1   sequence type=CDS   gene model=Glyma02g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATGAATAAGACTATAGTTTGGTTTAGGAGGGACCTTAGAATCGAGGACAATCCTGCATTAGCTGCTGCTGCTGCTGCCAAGGATGGTTCTGTCTTCCCTGTCTATATTTGGTGTCCCAAAGAGGAAGGGCAATTTTATCCGGGTCGAGTGTCGAGGTGGTGGCTGAAGCAGTCTCTTGCACACTTGGATAAGTCACTGAAATCACTTGGAGCTGAACTAATGCTTATCAAAACTGATAGTACTCTTGAGGCTCTTTTGGAATGTGTAAATGCAATTCAAGCAACAAAAGTAGTGTTTAACCATCTCTATGATCCGGTTTCACTTGTTCGTGATCACAACATCAAAGAAAAGCTAGTGGAACTTGGTATAAGTGTGAAAAGCTACAATGGGGATTTGTTGTTTGAGCCATGGAGTATATACGATGAGACCGGACATGCTTTTACAACCTTTGATCCCTTTTGGAACAGATGCTTGCATATGCAAATGAAAGCTTTTTCACTTATTCCTCCTCAATTAATTCTAGCGGAAGGAAAAGTTGGGAAATGTTCAATTGAACAACTAGGTCTTGAGGATGAATCAGAAAAATCGAGCAATGCATTATTAGGAAGAGCATGGTATCCAGGTTGGAACAAGACTGACAAGGCTTTAACCGAATTTGTTGAACAGCACCTACTTCACTACTCCAAAAACAGGTTAAAGGTTGGTGGGGATTCCACTTCACTCTTGTCACCATATATTCATTTTGGAGAACTGAGTGTGAGGAAAGTTTTTCAGTTGGCACGTACCAAGCAGATATTATGGGCAAATGAAGGAAACAGTGCTGGTGAAGAGAGTGCAACTGTTTTTCTCAGGGCCATTGGACTTAGAGAGTACTCGCGCTATCTTTGTTTCAATTTCCCATCCACCATAGAGAAGCCACTGCTTGGGAACTTGGCATTTTTCCCTTGGAAGACTGATCCTGCCAACTTTAAGGCTTGGAGACAAGGTAGGACTGGCTATCCTTTGGTTGATGCAGGAATGAGAGAACTATGGGCAACAGGATGGATACACAACAAAATAAGAGTCATAGTTTCTAGTTTCGCTGTGAAAATGTTGCTCATACCATGGAGATGGGGAATGAAATATTTCTGGGACACACTTTTGGATGCAGATCTTGAAAGTGATATCTTGGGCTGGCAGTACATCTCAGGCTGCTTGCCTGATGGCCACAAGCTTGAGCGCTTGGACGATCCTGCGATTCATGGGGCTAAATTCGATCCAGAAGGTGAGTATGTACGCCAATGGTTGCCTGAGTTGGCAAGAATGCCAGCTGAGTGGATTCATCACCCTTGGAATGCACCCCTTACTGTGCTAAGAGCATCAGGAGTTGAGTTAGGTCAAAACTATCCGAAACCAATCATTGACATAGATCAGGCAAGAGAACAATTGACTGAAGCAATATTCAAGATGTGGGAAAATGAGGCAGCTTCGAAAGGATCTGGCTCAGAAGAGAGACATGAAGTTGTTGATGAGAGTGAAAGTTTGGCCATTCCAAAAGTTTTCTTGAAGGACAAGGTTTCGCACATCACTTCTTCATCTAATGATCAGAAGGTGCCAACACTTGATAATCCCCAGATTGATCCTCCTAATAGAAAGAGACCAAAATGTTCGGCAGAGGTCGAGCAGAAGCAGAATAATTCGCGAAATCTTAGCAAGGATACCGGGGTGTCAAGCATTGATCAAGACGTGTCCTCCACGGCTGAATCTTCATGCAAGAGGGAGAGTTCAAGCTCTTATTCATTCTCTGTCCCACAATAA
Predicted protein sequences of Glyma02g00830
>Glyma02g00830.1   sequence type=predicted peptide   gene model=Glyma02g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMNKTIVWFRRDLRIEDNPALAAAAAAKDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLDKSLKSLGAELMLIKTDSTLEALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKAFSLIPPQLILAEGKVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHLLHYSKNRLKVGGDSTSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLRAIGLREYSRYLCFNFPSTIEKPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHKLERLDDPAIHGAKFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPKPIIDIDQAREQLTEAIFKMWENEAASKGSGSEERHEVVDESESLAIPKVFLKDKVSHITSSSNDQKVPTLDNPQIDPPNRKRPKCSAEVEQKQNNSRNLSKDTGVSSIDQDVSSTAESSCKRESSSSYSFSVPQ*






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